Read multi-FOV datasets#
- iohub.read_images(path: StrOrBytesPath, data_type: Literal['singlepagetiff', 'ometiff', 'ndtiff', 'omezarr'] = None) ReaderBase | BaseFOVMapping[source]#
Read image arrays and metadata from a Micro-Manager dataset. Supported formats are Micro-Manager-acquired TIFF datasets (single-page TIFF, multi-page OME-TIFF, NDTIFF), and converted OME-Zarr (v0.1/v0.4 HCS layout assuming a linear structure).
- Parameters:
- pathStrOrBytesPath
File path, directory path to ome-tiff series, or Zarr root path
- data_type
- Literal[“singlepagetiff”, “ometiff”, “ndtiff”, “omezarr”], optional
Dataset format, by default None
- Returns:
- ReaderBase | BaseFOVMapping
Image collection object for the dataset