iohub

N-dimensional bioimaging produces data and metadata in various formats, and iohub aims to become a unified Python interface to the most common formats used at the Biohub and in the broader imaging community.

Read

• OME-Zarr (OME-NGFF v0.4)

• Micro-Manager TIFF sequence, OME-TIFF (MMStack), and NDTiff datasets

• Custom data formats generated by Biohub microscopes

  • Supported: Falcon (PTI), Dorado (ClearControl), Dragonfly (OpenCell OME-TIFF), Mantis (NDTiff)

  • WIP: DaXi

Write

• OME-Zarr

• Multi-page TIFF stacks organized in a directory hierarchy that mimics OME-NGFF (WIP)