Welcome to protoSpaceJAM's documentation!
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**protoSpaceJAM** is a CRISPR knock-in design tool to design guide RNAs and DNA donors that maximizes success rate using an array of known rules.

Workflow overview
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.. figure:: /_static/images/workflow.png
   :width: 120%
   :align: center
   :alt: workflow 

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Check out the :doc:`usage` section and our `paper <https://doi.org/10.1093/nar/gkae553>`_ for more information.   
:doc:`sourcecode` is available. 


Contents
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.. toctree::

   usage
   algorithmandparameters
   sourcecode
   changelog