:orphan:

Examples
========

A gallery of examples to showcase how iohub can be used.



.. raw:: html

    <div class="sphx-glr-thumbnails">

.. thumbnail-parent-div-open

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script shows how to store a larger-than-RAM array to a OME-Zarr dataset. The same method w...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_run_large_array_ome_zarr_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_run_large_array_ome_zarr.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Writing a Large Array</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Example of opening a Clear Control dataset and viewing with napari.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_run_view_clearcontrol_dataset_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_run_view_clearcontrol_dataset.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Viewing Clear Control</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script shows how to create a tiled single-resolution OME-Zarr dataset, make a tiles grid, ...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_run_tiled_ome_zarr_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_run_tiled_ome_zarr.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Tiled OME-Zarr</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script writes a high content screening (HCS) OME-Zarr dataset with a single FOV and a sing...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_run_multi_fov_hcs_ome_zarr_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_run_multi_fov_hcs_ome_zarr.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Multi-FOV HCS OME-Zarr</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script writes two positions using the high content screening (HCS) OME-Zarr dataset with t...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_run_coordinate_transform_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_run_coordinate_transform.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Coordinate Transform</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script shows how to create a single-FOV, single-scale OME-Zarr dataset, read data in read-...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_run_single_fov_ome_zarr_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_run_single_fov_ome_zarr.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Single-FOV OME-Zarr</div>
    </div>


.. thumbnail-parent-div-close

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/run_large_array_ome_zarr
   /auto_examples/run_view_clearcontrol_dataset
   /auto_examples/run_tiled_ome_zarr
   /auto_examples/run_multi_fov_hcs_ome_zarr
   /auto_examples/run_coordinate_transform
   /auto_examples/run_single_fov_ome_zarr